{ "_id": "6a252b3d4b233be1983945df", "Package": "ProSGPV", "Title": "Penalized Regression with Second-Generation P-Values", "Version": "1.0.1", "Date": "2021-08-24", "Authors@R": "c(person(given = \"Yi\",\nfamily = \"Zuo\",\nrole = c(\"aut\", \"cre\"),\nemail = \"yi.zuo@vanderbilt.edu\",\ncomment = c(ORCID = \"0000-0002-6643-8326\")),\nperson(\"Thomas\", \"Stewart\", email = \"thomas.stewart@vanderbilt.edu\",\nrole = c(\"aut\")),\nperson(\"Jeffrey\", \"Blume\", email = \"j.blume@vanderbilt.edu\",\nrole = c(\"aut\"))\n)", "Maintainer": "Yi Zuo ", "Description": "Implementation of penalized regression with\nsecond-generation p-values for variable selection. The\nalgorithm can handle linear regression, GLM, and Cox\nregression. S3 methods print(), summary(), coef(), predict(),\nand plot() are available for the algorithm. Technical details\ncan be found at Zuo et al. (2021)\n.", "License": "GPL-3", "Encoding": "UTF-8", "URL": "https://github.com/zuoyi93/ProSGPV", "BugReports": "https://github.com/zuoyi93/ProSGPV/issues", "LazyData": "true", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.1.1", "VignetteBuilder": "knitr", "Repository": "https://zuoyi93.r-universe.dev", "Date/Publication": "2021-08-24 12:43:35 UTC", "RemoteUrl": "https://github.com/zuoyi93/prosgpv", "RemoteRef": "HEAD", "RemoteSha": "d07b8f77d22dd52d9dadc80ab8f6afcc6017a2c2", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-07 08:22:29 UTC", "User": "root" }, "Author": "Yi Zuo [aut, cre] (ORCID: ),\nThomas Stewart [aut],\nJeffrey Blume [aut]", "MD5sum": "22f4b9ca6d205334a833150ad5312143", "_user": "zuoyi93", "_type": "src", "_file": "ProSGPV_1.0.1.tar.gz", "_fileid": "bae996d3d0e4219d18f102584968158b9f6af4e10a1c04a7850abcfc05838761", "_filesize": 4924801, "_sha256": "bae996d3d0e4219d18f102584968158b9f6af4e10a1c04a7850abcfc05838761", "_created": "2026-06-07T08:22:29.000Z", "_published": "2026-06-07T08:26:37.620Z", "_distro": "noble", "_jobs": [ { "job": 79944058413, "time": 136, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7462329020" }, { "job": 79944058363, "time": 127, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7462328193" }, { "job": 79944058393, "time": 210, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7462334683" }, { "job": 79944058400, "time": 130, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7462326150" }, { "job": 79943887771, "time": 172, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7462312134" }, { "job": 79944058402, "time": 100, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7462324754" }, { "job": 79944058362, "time": 114, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7462326487" }, { "job": 79944058361, "time": 97, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7462324331" }, { "job": 79944058369, "time": 108, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7462325604" } ], "_buildurl": "https://github.com/r-universe/zuoyi93/actions/runs/27087188854", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/zuoyi93/prosgpv", "_commit": { "id": "d07b8f77d22dd52d9dadc80ab8f6afcc6017a2c2", "author": "Yi Zuo ", "committer": "Yi Zuo ", "message": "update citation\n", "time": 1629809015 }, "_maintainer": { "name": "Yi Zuo", "email": "yi.zuo@vanderbilt.edu", "login": "zuoyi93", "description": "Statistician at MSD", "uuid": 25957920, "orcid": "0000-0002-6643-8326" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "glmnet", "role": "Depends" }, { "package": "brglm2", "role": "Depends" }, { "package": "MASS", "role": "Imports" }, { "package": "survival", "role": "Imports" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" } ], "_owner": "zuoyi93", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_topics": [ "penalized-regression" ], "_stars": 5, "_contributors": [ { "user": "zuoyi93", "count": 53, "uuid": 25957920 } ], "_userbio": { "uuid": 25957920, "type": "user", "name": "Yi Zuo", "description": "Statistician at MSD" }, "_downloads": { "count": 184, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/ProSGPV" }, "_devurl": "https://github.com/zuoyi93/prosgpv", "_searchresults": 11, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/ProSGPV.html", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/zuoyi93/prosgpv", "_realowner": "zuoyi93", "_cranurl": true, "_releases": [ { "version": "0.1.0", "date": "2021-01-06" }, { "version": "0.3.0", "date": "2021-05-15" }, { "version": "1.0.0", "date": "2021-08-06" } ], "_exports": [ "gen.sim.data", "pro.sgpv" ], "_datasets": [ { "name": "spine", "title": "Spine data", "object": "data", "class": [ "data.frame" ], "fields": [ "pelvic_incidence", "pelvic_tilt", "lumbar_lordosis_angle", "sacral_slope", "pelvic_radius", "degree_spondylolisthesis", "pelvic_slope", "direct_tilt", "thoracic_slope", "cervical_tilt", "sacrum_angle", "scoliosis_slope", "outcome" ], "rows": 310, "table": true, "tojson": true }, { "name": "t.housing", "title": "Tehran housing data", "object": "data", "class": [ "data.frame" ], "fields": [ "V2", "V3", "V4", "V5", "V6", "V7", "V8", "V11", "V12", "V13", "V14", "V15", "V16", "V17", "V18", "V19", "V20", "V21", "V22", "V23", "V24", "V25", "V26", "V27", "V28", "V29", "V9" ], "rows": 372, "table": true, "tojson": true } ], "_help": [ { "page": "coef.sgpv", "title": "'coef.sgpv': Extract coefficients from the model fit", "topics": [ "coef.sgpv" ] }, { "page": "gen.sim.data", "title": "'gen.sim.data': Generate simulation data", "topics": [ "gen.sim.data" ] }, { "page": "get.candidate", "title": "'get.candidate': Get candidate set", "topics": [ "get.candidate" ] }, { "page": "get.coef", "title": "'get.coef': Get coefficients at each 'lambda'", "topics": [ "get.coef" ] }, { "page": "get.var", "title": "'get.var': Get indices", "topics": [ "get.var" ] }, { "page": "gvif", "title": "'gvif': Get GVIF for each variable", "topics": [ "gvif" ] }, { "page": "plot.sgpv", "title": "'plot.sgpv': Plot variable selection results", "topics": [ "plot.sgpv" ] }, { "page": "predict.sgpv", "title": "'predict.sgpv': Prediction using the fitted model", "topics": [ "predict.sgpv" ] }, { "page": "print.sgpv", "title": "'print.sgpv': Print variable selection results", "topics": [ "print.sgpv" ] }, { "page": "pro.sgpv", "title": "'pro.sgpv' function", "topics": [ "pro.sgpv" ] }, { "page": "spine", "title": "Spine data", "topics": [ "spine" ] }, { "page": "summary.sgpv", "title": "'summary.sgpv': Summary of the final model", "topics": [ "summary.sgpv" ] }, { "page": "t.housing", "title": "Tehran housing data", "topics": [ "t.housing" ] } ], "_readme": "https://github.com/zuoyi93/prosgpv/raw/HEAD/README.md", "_rundeps": [ "brglm2", "codetools", "enrichwith", "foreach", "glmnet", "iterators", "lattice", "MASS", "Matrix", "nleqslv", "nnet", "numDeriv", "Rcpp", "RcppEigen", "shape", "statmod", "survival" ], "_vignettes": [ { "source": "glm-cox-vignette.Rmd", "filename": "glm-cox-vignette.html", "title": "ProSGPV in GLM and Cox models", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "GLM examples", "Logistic regression", "Poisson regression", "Cox regression", "Way to address high correlation or dense signals", "References" ], "created": "2021-04-22 00:31:04", "modified": "2021-08-24 12:43:35", "commits": 4 }, { "source": "linear-vignette.Rmd", "filename": "linear-vignette.html", "title": "ProSGPV in linear regression", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Two-stage algorithm", "One-stage algorithm", "High dimensional case where $p>n$", "Way to address high correlation or dense signals", "References" ], "created": "2021-03-28 14:11:52", "modified": "2021-08-24 12:43:35", "commits": 9 } ], "_score": 4.740362689494244, "_indexed": true, "_nocasepkg": "prosgpv", "_universes": [ "zuoyi93" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.0.1", "date": "2026-06-07T08:24:29.000Z", "distro": "noble", "commit": "d07b8f77d22dd52d9dadc80ab8f6afcc6017a2c2", "fileid": "5f5e79cd1d61f5ce75d56d5d0f8fcbaeded612aba09af15190ecaf801e6cffe7", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/zuoyi93/actions/runs/27087188854" }, { "r": "4.6.0", "os": "linux", "version": "1.0.1", "date": "2026-06-07T08:24:23.000Z", "distro": "noble", "commit": "d07b8f77d22dd52d9dadc80ab8f6afcc6017a2c2", "fileid": "015ce7ba8ec03994b89db45476c1132865b560da8dd22f12e37b8dc8ece743b9", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/zuoyi93/actions/runs/27087188854" }, { "r": "4.5.3", "os": "mac", "version": "1.0.1", "date": "2026-06-07T08:25:13.000Z", "commit": "d07b8f77d22dd52d9dadc80ab8f6afcc6017a2c2", "fileid": "ee652d66befe40bd868017a2fef82d74aff1a4a2332991a959625f9b523710bf", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/zuoyi93/actions/runs/27087188854" }, { "r": "4.6.0", "os": "mac", "version": "1.0.1", "date": "2026-06-07T08:24:16.000Z", "commit": "d07b8f77d22dd52d9dadc80ab8f6afcc6017a2c2", "fileid": "6c1c3e2a0fa5e7616bf6952a94995f4daee0e72fb9aa79769747b1b6e39a42c6", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/zuoyi93/actions/runs/27087188854" }, { "r": "4.6.0", "os": "wasm", "version": "1.0.1", "date": "2026-06-07T08:24:25.000Z", "commit": "d07b8f77d22dd52d9dadc80ab8f6afcc6017a2c2", "fileid": "33fd133d16f4cde8589ed26664756206cb250ebe44d43698fc12473d6f9b2f50", "status": "success", "buildurl": "https://github.com/r-universe/zuoyi93/actions/runs/27087188854" }, { "r": "4.7.0", "os": "win", "version": "1.0.1", "date": "2026-06-07T08:24:03.000Z", "commit": "d07b8f77d22dd52d9dadc80ab8f6afcc6017a2c2", "fileid": "99dbe05069aa8932b6393d0b5c59798ec67ee5be49deb9ac7a2eecaf13c3913e", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/zuoyi93/actions/runs/27087188854" }, { "r": "4.5.3", "os": "win", "version": "1.0.1", "date": "2026-06-07T08:23:44.000Z", "commit": "d07b8f77d22dd52d9dadc80ab8f6afcc6017a2c2", "fileid": "ae8439612a255008d67235c24a87da4c31967ddebd93121ae780976db3fd2fbf", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/zuoyi93/actions/runs/27087188854" }, { "r": "4.6.0", "os": "win", "version": "1.0.1", "date": "2026-06-07T08:23:57.000Z", "commit": "d07b8f77d22dd52d9dadc80ab8f6afcc6017a2c2", "fileid": "955df58c044267d9ed8af6a95eed123e1823ef877afdea742390d515114d5d43", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/zuoyi93/actions/runs/27087188854" } ] }